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工具描述:
TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks. TransDecoder identifies likely coding sequences based on the following criteria:
* a minimum length open reading frame (ORF) is found in […]
Development of microsatellite markers by transcriptome sequencing in two species of Amorphophallus (Araceae)
links: BMC Genomics 2013, 14:490 doi:10.1186/1471-2164-14-490. http://www.biomedcentral.com/1471-2164/14/490/abstract Abstract
Background
Amorphophallus is a genus of perennial plants widely distributed in the tropics or subtropics of West Africa and South Asia. Its corms contain a high level of water-soluble glucomannan; therefore, it has long […]