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TransDecoder:预测转录本序列中的开放阅读框(ORF)

工具描述:

TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks. TransDecoder identifies likely coding sequences based on the following criteria:

* a minimum length open reading frame (ORF) is found in […]

June 10th, 2015 | Tags: | Category: Tools | Comments are closed

Development of microsatellite markers by transcriptome sequencing in two species of Amorphophallus (Araceae)

Development of microsatellite markers by transcriptome sequencing in two species of Amorphophallus (Araceae)

links: BMC Genomics 2013, 14:490 doi:10.1186/1471-2164-14-490. http://www.biomedcentral.com/1471-2164/14/490/abstract Abstract

Background

Amorphophallus is a genus of perennial plants widely distributed in the tropics or subtropics of West Africa and South Asia. Its corms contain a high level of water-soluble glucomannan; therefore, it has long […]

July 23rd, 2013 | Tags: , | Category: Papers, Sequencing | Leave a comment
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